FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486793

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486793
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18407875
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1664206190.40729035806686No Hit
NACATCCT6911333.7545507018056132No Hit
TACATCCT2940161.5972294466362902No Hit
AACATCCT2164121.175649008916021No Hit
GACATCCT2096371.1388441088392875No Hit
CACATCCA544020.29553655704419984No Hit
CACAGCCT539700.29318973537141035No Hit
CGCATCCT228510.12413708806692787No Hit
CCCATCCT217150.11796581626070364No Hit
CACATCCG213780.1161350780576248No Hit
CACATGCT210640.1144292863787917No Hit
CACACCCT193930.10535164976946008No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)