FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486815

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486815
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15410487
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1370218988.91470464236464No Hit
GTCGCTGA5292603.4344144996845327No Hit
NTCGCTGA5200113.374396928533148No Hit
CTCGCTGA1564521.0152307321631042No Hit
ATCGCTGA1514410.9827139142325612No Hit
TTCGCGGA400740.26004369621803647No Hit
TTCGCTGC304760.19776143349655334No Hit
TTCGCTGG287650.18665860462424064No Hit
TTCGCTAA267800.17377776575133544No Hit
TTGGCTGA207380.13457069851199382No Hit
TGCGCTGA188440.12228036661008831No Hit
TTCGATGA186740.12117722171920979No Hit
TTCGGTGA185020.12006109865314443No Hit
TTCGCTGT181580.11782885252101377No Hit
TTCGCTTA169920.11026257638710574No Hit
TTCGCCGA155640.1009961593037261No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)