FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486816

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486816
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17240737
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1584851991.92483476779444No Hit
NGGATCTA5761183.3416088882975243No Hit
TGGATCTA1738531.0083849663735374No Hit
GGGATCTA1306290.7576764264775919No Hit
AGGAGCTA637260.36962456999373056No Hit
AGGGTCTA473640.27472143447231984No Hit
CGGATCTA415440.2409641768794455No Hit
AGGATGTA401980.23315708603408308No Hit
AGGCTCTA317320.18405245669022152No Hit
AGGACCTA278840.16173322520957195No Hit
AGGAACTA271370.1574004637968783No Hit
AGGTTCTA267130.15494117217842832No Hit
AGGATCTC260740.15123483410250965No Hit
AGGATCGA197070.1143048583131916No Hit
AGGATCTG192380.11158455697108541No Hit
AGTATCTA186230.10801742408111671No Hit
AGGATCAA184240.10686318108094799No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)