FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486817

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486817
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17307995
Sequences flagged as poor quality0
Sequence length8
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1550382389.57607741393501No Hit
NGGATCTA6497293.753924125815844No Hit
TGGATCTA3147701.8186393051303749No Hit
CGGATCTA2566291.4827194022184547No Hit
GGGATCTA2303831.3310784986938118No Hit
AGGAGCTA648610.37474589055520297No Hit
AGGGTCTA348210.20118448150695675No Hit
AGGATGTA276680.1598567598384446No Hit
AGGACCTA231210.1335856637351698No Hit
AGGCTCTA230930.1334238887866561No Hit
AGGAACTA223050.12887107952134258No Hit
AGGTTCTA198580.11473310455659363No Hit
AGGATCGA178430.10309108594034144No Hit
AGGATCTC175830.1015888899898573No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)