FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486821

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486821
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17572123
Sequences flagged as poor quality0
Sequence length8
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1502696685.51593908146444No Hit
NGCAATTC7548424.295679013856208No Hit
TGCAATTC5931163.37532351668606No Hit
CGCAATTC5031642.863421795989022No Hit
GGCAATTC4058042.30936239178385No Hit
AGCAATGC328210.18677879730297814No Hit
AGCAATTA322760.1836772938591427No Hit
AGCAAGTC289520.16476096826775No Hit
AGCAGTTC250810.14273175756850778No Hit
AGCACTTC223960.1274518736296121No Hit
AGCAATCC183800.10459749228934943No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)