FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486822

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486822
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16125287
Sequences flagged as poor quality0
Sequence length8
%GC36

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1291927780.11812130847656No Hit
TATGCTTA8505345.274535578808613No Hit
AATGCTTA7867464.878958123349991No Hit
NATGCTTA6757844.1908339367851255No Hit
GATGCTTA5444813.3765662589447243No Hit
CATGCGTA648410.4021075717908153No Hit
CATGCCTA546210.33872885487247456No Hit
CATGCTAA299060.1854602649862914No Hit
CATGCATA275900.17109772991947367No Hit
CAGGCTTA247680.1535972662067968No Hit
CATGCTGA185400.11497469781468075No Hit
CGTGCTTA170180.10553610611705702No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)