FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486825

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486825
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17635551
Sequences flagged as poor quality0
Sequence length8
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1584001189.81863396272676No Hit
NGCAATTC6964233.948972164238021No Hit
TGCAATTC3241351.8379635544134687No Hit
GGCAATTC2343621.3289179340072788No Hit
CGCAATTC1603140.9090387932874908No Hit
AGCAAGTC446460.253159087572597No Hit
AGCAATGC420870.2386486251549498No Hit
AGCAATTA359270.20371918064822583No Hit
ANCAATTC269940.15306581574910813No Hit
AGCAGTTC252290.14305762263963287No Hit
AGCACTTC248600.14096525818785022No Hit
AGCAACTC219630.1245382126138276No Hit
AGCAATCC200100.11346399100317307No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)