FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486826

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486826
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17297048
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCGCGA25150.080.0864941
TTTGCGC26800.078.151131
CGCCGAA28300.076.071811
TTACGCG10600.075.222679
GTGCGAC31750.074.931091
CGGTACG28950.072.599241
GCGCTAG33300.070.785851
GACGCGT25350.069.6667561
TTACCCG34350.069.47191
AACCGCG30100.068.128371
ATAACGC32600.068.0525051
ACGACCG24050.067.667161
CGTTGCG13900.067.273167
GGCGACT31800.067.240141
TAGGCGC33750.066.814831
CGAACGC32450.065.893271
CCGCTAT34850.064.077681
TTCCGCG16700.062.5047387
CGCGGTA33500.062.085221
GTACCGT37400.061.8281148
Produced by FastQC (version 0.11.5)