FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486828

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486828
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16572583
Sequences flagged as poor quality0
Sequence length8
%GC36

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1438286386.78709287502136No Hit
NATGCTTA6492773.917777934797491No Hit
TATGCTTA5033423.0371970380235838No Hit
AATGCTTA4327752.6113913564349023No Hit
GATGCTTA3332622.010923704530549No Hit
CATGCTAA332000.20033087177780315No Hit
CATGCGTA307750.18569827045065937No Hit
CAGGCTTA267750.16156202083887586No Hit
CGTGCTTA210160.12681185546031057No Hit
CATGCTGA169430.10223511929311199No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)