FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486833

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486833
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19153982
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1741183190.90449703878807No Hit
NATAGCGA7223103.771069639722957No Hit
TATAGCGA2855791.4909641243267329No Hit
AATAGCGA2187281.141945314556524No Hit
GATAGCGA2024991.0572161966112321No Hit
CATAGCGC301180.1572414550666279No Hit
CATAGCGG242430.1265689818440886No Hit
CAGAGCGA233600.12195897437932227No Hit
CATATCGA210870.11009199027126577No Hit
CATAGCAA197660.10319525203688715No Hit
CGTAGCGA196760.10272537585135039No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)