FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486834

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486834
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19418135
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCGCGA30000.080.210651
CGCCGAA32150.077.333991
TTACGCG13000.076.954249
CGGTACG29100.071.949011
GCGCTAG33600.070.1021041
GTGCGAC30550.069.247971
TTACCCG38500.068.544271
ACGACCG30050.067.7390061
TTTGCGC30850.067.631971
GCGCGTA32050.066.687521
TCGTACG38350.064.8373958
TACGAAC41050.063.577961
ATAACGC36600.063.164251
CCGAACG21950.063.0805789
GGCGACT39650.062.889221
CGAACTA43400.062.1454661
CCTTACG39400.061.9966661
CCGCTAT36950.061.778951
GTACGCT29000.061.744148
TTCCGCG18100.061.6793947
Produced by FastQC (version 0.11.5)