FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15510187
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1270602281.92049522033487No Hit
GTCGCTGA9207325.936304958799013No Hit
NTCGCTGA6103903.9354135446593905No Hit
ATCGCTGA5934343.8260918453143082No Hit
CTCGCTGA4752693.0642377167986434No Hit
TTCGCTAA238250.15360872180328966No Hit
TTCGCTGC198430.12793527247608297No Hit
TTCGCTGG194250.12524026950803366No Hit
TTCGCGGA190610.12289342481815338No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)