FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486837

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486837
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15095180
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1137423075.35007863437203No Hit
GTCGCTGA11290117.479281466004379No Hit
ATCGCTGA9465486.270531388164964No Hit
CTCGCTGA7330744.856344872999196No Hit
NTCGCTGA6353964.209264149218493No Hit
TTCGCGGA493240.3267533080095765No Hit
TTCGCCGA477300.3161936459187635No Hit
TTCGCAGA251740.1667684651657019No Hit
TTCGCTAA216880.1436750008943252No Hit
TTCGCTGC189750.12570237652018726No Hit
TTCGCTGG179440.1188723817801444No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)