FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486844

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486844
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19418135
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT1459477275.16052391231187No Hit
GGTCGGAT14350797.390405927242755No Hit
AGTCGGAT12286076.3271112287560065No Hit
CGTCGGAT9372754.826802367992601No Hit
NGTCGGAT8143344.19367771415741No Hit
TGTCGCAT524060.2698817368403299No Hit
TGGCGGAT466570.24027539204975143No Hit
TGTCGGGT440950.22708154001401265No Hit
TGCCGGAT315260.16235338769660423No Hit
TGTCGAAT310840.160077164980056No Hit
TGTCGGCT301490.15526207846428094No Hit
TGTCGTAT248320.12788045813874505No Hit
TGTCGGAG247230.12731912719733382No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)