FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486847

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486847
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17412307
Sequences flagged as poor quality0
Sequence length8
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1481949485.10930803138264No Hit
TACTTGAC7261894.170550174655202No Hit
NACTTGAC6832663.9240406225320976No Hit
CACTTGAC5024122.8853844582455386No Hit
GACTTGAC4987442.864318898121886No Hit
AACTTGGC231440.1329174818707251No Hit
AGCTTGAC229120.13158509093596846No Hit
AACTTGCC190720.10953172373999608No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)