FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486848

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486848
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17094924
Sequences flagged as poor quality0
Sequence length8
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1318317277.11746481002197No Hit
TACTTGAC11810126.908553673593401No Hit
CACTTGAC9748875.702786394370634No Hit
GACTTGAC7571754.429238761166765No Hit
NACTTGAC7251604.241960947003918No Hit
AACTTGGC268380.15699397084187094No Hit
AACTTGCC258190.15103313708794494No Hit
AGCTTGAC241890.14149814295752353No Hit
AACTTGAA204230.1194682117334947No Hit
AACTGGAC184870.10814321257000031No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)