FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486851

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486851
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17988920
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1445148480.3354731690396No Hit
TACATCCT9476135.2677592651476575No Hit
AACATCCT8769274.874817387591918No Hit
NACATCCT7534694.188517153892507No Hit
GACATCCT6068413.3734154134878582No Hit
CACATGCT495650.27553071557380876No Hit
CACATCCA468400.26038250211797037No Hit
CACATACT338640.18824921118110483No Hit
CACAGCCT337670.18770999037185113No Hit
CACATTCT238250.13244263691205477No Hit
CGCATCCT200520.11146861512531046No Hit
CACATCCG190840.10608752498760347No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)