FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486854

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486854
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16623650
Sequences flagged as poor quality0
Sequence length8
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1283994177.23899985863514No Hit
TGCAATTC10932946.576738562229114No Hit
CGCAATTC9397925.653343279003107No Hit
NGCAATTC7001994.212065340644203No Hit
GGCAATTC6971094.19347736507927No Hit
AGCAATGC387200.23292116953857908No Hit
AGCAATTA356600.2145136597558298No Hit
AGCAAGTC338280.20349321599047143No Hit
AGCAGTTC272260.1637787128578862No Hit
AGCACTTC257770.15506221557840788No Hit
AGCAATCC236670.14236945556481279No Hit
AGCAATTT191720.11532966586760428No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)