FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486855

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486855
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18150252
Sequences flagged as poor quality0
Sequence length8
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1628547789.72590022441562No Hit
NACTTGAC7270104.005509124611603No Hit
TACTTGAC3912472.155600924989912No Hit
GACTTGAC2833781.561289617356277No Hit
CACTTGAC1776320.978675117017659No Hit
AGCTTGAC395280.2177821002154681No Hit
ANCTTGAC278770.15359015400998288No Hit
AACTTGGC249400.1374085604982234No Hit
AACTTGCC225450.12421315142070755No Hit
ACCTTGAC191640.10558531088163403No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)