FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486856

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486856
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17867514
Sequences flagged as poor quality0
Sequence length8
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTAGAG1507854684.3908447476241No Hit
TAGTAGAG6994973.914909483210703No Hit
NAGTAGAG6850753.834193161958625No Hit
CAGTAGAG4945822.76805155994281No Hit
GAGTAGAG4789492.6805575750493325No Hit
AAGGAGAG1054450.590149250757548No Hit
AAGTGGAG429040.24012294043816057No Hit
AAGTCGAG342270.19155994504887472No Hit
AAGCAGAG325570.18221337338815013No Hit
AAGAAGAG323920.18128990972107256No Hit
AGGTAGAG305370.17090793940332158No Hit
AAGTAGGG285270.1596584729134674No Hit
AAGTAGCG218340.1221994285271023No Hit
AAGTTGAG206410.11552250637665654No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)