FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486857

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486857
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19938256
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT1626078281.55568872222325No Hit
GGTCGGAT11692565.864384527914577No Hit
NGTCGGAT7834513.92938579984127No Hit
AGTCGGAT7767983.8960177861092764No Hit
CGTCGGAT6072753.045777925611949No Hit
TGGCGGAT513130.2573595203111045No Hit
TGTCGGGT454380.22789355297674982No Hit
TGTCGGCT354060.17757821947917612No Hit
TGCCGGAT343060.1720611872974246No Hit
TGTCGGAG248790.12478022149981423No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)