FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19211144
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1675185287.19861763568062No Hit
NATAGCGA7567793.939270873197348No Hit
TATAGCGA5614562.92255370112264No Hit
AATAGCGA4971862.5880082935196365No Hit
GATAGCGA3693531.9225976339566242No Hit
CATAGCGC280030.14576435427270756No Hit
CATAGCGG238720.12426121005599668No Hit
CGTAGCGA218760.11387140713744065No Hit
CAGAGCGA203850.1061102868210243No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)