FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486867

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486867
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18697135
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1509440380.73110131578983No Hit
TATAGCGA9664245.168834690448564No Hit
AATAGCGA9090734.862097856168873No Hit
NATAGCGA7861834.204831381920278No Hit
GATAGCGA6166063.297863549682879No Hit
CATAGGGA429980.2299710624114336No Hit
CATAGAGA335130.17924136505405774ABI Solid3 Adapter B (100% over 8bp)
CATAGCGC262910.1406151263281781No Hit
CATAGCGG224340.11998629736587985No Hit
CATAGTGA194430.10398919406636364No Hit
CAGAGCGA191200.10226165666558004No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)