FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486870

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486870
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19125397
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1644647785.9928659258681No Hit
NATAGCGA8266984.322514194084442No Hit
TATAGCGA6079663.178841202616604No Hit
AATAGCGA5702032.981391706535556No Hit
GATAGCGA4078032.132259006179061No Hit
CATAGCGC280590.14671068004496848No Hit
CATAGCGG237660.1242640871716284No Hit
CAGAGCGA191620.10019138426250708No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)