FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486873

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486873
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20764490
Sequences flagged as poor quality0
Sequence length8
%GC60

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCAGA1488513171.68551214116022No Hit
TGTCCAGA235029811.318833258124808No Hit
AGTCCAGA13136316.326334044322783No Hit
CGTCCAGA9722664.682349530376137No Hit
NGTCCAGA8706794.193115265532647No Hit
GGTCCCGA674070.3246263211858322No Hit
GGTCCGGA463660.22329467278030907No Hit
GGGCCAGA426540.20541799967155466No Hit
GGCCCAGA264160.1272171866489377No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)