FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486874

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486874
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21336900
Sequences flagged as poor quality0
Sequence length8
%GC60

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCAGA1687340279.08085054529946No Hit
TGTCCAGA18766098.795134250992412No Hit
NGTCCAGA8392963.933542360886539No Hit
AGTCCAGA8232343.85826432143376No Hit
CGTCCAGA6202342.9068608841959236No Hit
GGGCCAGA494790.23189404271473363No Hit
GGCCCAGA292630.13714738317187597No Hit
GGTCCAGC220540.10336084435883376No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)