FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486875

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486875
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17348650
Sequences flagged as poor quality0
Sequence length8
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1550669789.38273006833384No Hit
NGGATCTA6856313.952071198623524No Hit
TGGATCTA3565752.055347246039317No Hit
GGGATCTA2582431.4885481002844603No Hit
CGGATCTA1626430.9374965775434976No Hit
AGGAGCTA475760.27423459462263633No Hit
AGGATGTA403800.23275586284811786No Hit
AGGGTCTA327410.18872361826424536No Hit
ANGATCTA268530.15478437803517853No Hit
AGGCTCTA223480.12881693964660074No Hit
AGGATCGA205540.11847607738930693No Hit
AGGTTCTA188620.10872315713326397No Hit
AGGATCTC183420.10572580575433824No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)