FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486882

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486882
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15455973
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1325237285.7427222472503No Hit
GTCGCTGA7426874.805177907595983No Hit
NTCGCTGA5847973.7836310920056606No Hit
ATCGCTGA3626612.3464132604268912No Hit
CTCGCTGA2710531.7537103616834735No Hit
TTCGCTAA251280.162577923758019No Hit
TTCGGTGA241500.15625027295272836No Hit
TTCGCGGA236800.15320937737145374No Hit
TTCGCTGC212660.13759082006677936No Hit
TTCGCTGG191540.1239261999228389No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)