FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486894

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486894
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19924377
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT1680636384.350757868113No Hit
GGTCGGAT10393055.216248417704604No Hit
NGTCGGAT7928083.979085519210965No Hit
AGTCGGAT4728222.373082982720112No Hit
CGTCGGAT3919251.967062759352526No Hit
TGGCGGAT542900.2724802888441631No Hit
TGTCGGGT531280.2666482369812617No Hit
TGTCGGCT383720.19258820489092332No Hit
TGCCGGAT344880.17309449625451276No Hit
TNTCGGAT302040.15159319661538226No Hit
TGTCGGAG255280.12812445779358622No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)