FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486896

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486896
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19827268
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT1586862480.03434462075158No Hit
GGTCGGAT12058376.08171029916981No Hit
AGTCGGAT8962104.520088193693654No Hit
NGTCGGAT8557624.316086311033875No Hit
CGTCGGAT6724643.3916119961660876No Hit
TGGCGGAT487270.24575750930486234No Hit
TGTCGGGT466860.23546360497068985No Hit
TGTCGGCT337640.1702907329441454No Hit
TGCCGGAT314760.15875106948672907No Hit
TGTCGGAG244080.1231031930369832No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)