FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486897

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486897
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17262288
Sequences flagged as poor quality0
Sequence length8
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1468356085.0614935864817No Hit
NGGATCTA7419334.297999199179159No Hit
TGGATCTA6230623.6093824874199756No Hit
CGGATCTA4903982.840863273744477No Hit
GGGATCTA4267992.4724358671341826No Hit
AGGAGCTA465440.26962822077814946No Hit
AGGGTCTA316200.18317386432204122No Hit
AGGATGTA265700.15391934139900806No Hit
AGGCTCTA207420.12015788405337693No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)