FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18456249
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1655016389.67240851594492No Hit
NACATCCT7311933.9617638448636012No Hit
TACATCCT3450491.8695510664165833No Hit
GACATCCT2397141.2988229623473329No Hit
AACATCCT2003011.0852746947659841No Hit
CACATCCA542150.29374874602092765No Hit
CGCATCCT368290.19954758954541632No Hit
CACAGCCT353230.19138775164986127No Hit
CACATGCT350080.18968101264780293No Hit
CNCATCCT279790.15159635091615853No Hit
CCCATCCT268860.14567423748996883No Hit
CACATCCG201050.10893329408375449No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)