FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486899

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486899
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18113539
Sequences flagged as poor quality0
Sequence length8
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1629523989.96165244130371No Hit
NACTTGAC6872413.7940735932387373No Hit
TACTTGAC3489521.9264705809284424No Hit
CACTTGAC2786581.5383962239515978No Hit
GACTTGAC2535621.3998479259077976No Hit
AACTGGAC314460.17360494821028624No Hit
AGCTTGAC260350.14373226568259245No Hit
AACTTGGC231480.12779391150453812No Hit
AACTTGCC230230.12710381996582776No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)