FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486902

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486902
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17533057
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1619866192.389256477065No Hit
NGCAATTC5856763.340410060835369No Hit
TGCAATTC1421910.8109880667130667No Hit
GGCAATTC1086760.6198348639373042No Hit
AGCAAGTC513600.2929323734018546No Hit
AGCAATTA428980.24466925533864403No Hit
AGCACTTC428330.24429852706233718No Hit
AGCAATGC413060.23558926432509741No Hit
AGCAGTTC376700.21485129489968577No Hit
CGCAATTC349040.19907538086484292No Hit
AGCAATCC235580.13436333435749398No Hit
AGCAATTT229840.13108951850210718No Hit
AGCATTTC219230.12503809233039054No Hit
AGGAATTC213140.12156465355699236No Hit
AGCAACTC183540.10468225820517209No Hit
AGCGATTC182020.10381532438980835No Hit
AGCCATTC177420.1011917088959444No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)