FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20963154
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT1681138180.19490292348183No Hit
GTGAGCCT12909746.158300416053806No Hit
ATGAGCCT9531894.546973227406525No Hit
NTGAGCCT9071424.327316395233274No Hit
CTGAGCCT7172513.4214841907854137No Hit
TTGAGCCG276210.13175975332719495No Hit
TGGAGCCT243540.11617526637451597No Hit
TTGGGCCT229420.1094396387108543No Hit
TTGAGCCC229020.10924882772888087No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)