FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486907

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486907
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16438297
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1518360592.36726286184025No Hit
NATGCTTA5522053.359259173866977No Hit
TATGCTTA1404370.8543281582027628No Hit
GATGCTTA994320.6048801770645706No Hit
CATGCGTA579190.35234185147038044No Hit
CAGGCTTA438750.2669072106435356No Hit
CATGCTAA364530.22175654813877616No Hit
CGTGCTTA298130.18136306942258068No Hit
AATGCTTA281390.171179532770335No Hit
CATGCTGA239590.14575110791586257No Hit
CACGCTTA225230.13701540980796248No Hit
CATGCCTA217780.13248331016284715No Hit
CATGATTA206770.12578553605644185No Hit
CCTGCTTA201920.12283510877069564No Hit
CATGGTTA201030.12229369015537316No Hit
CATGCTTC191140.11627725183454223No Hit
CATGCTTG180790.10998097917320755No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)