FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486911

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486911
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16623701
Sequences flagged as poor quality0
Sequence length8
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1410171884.82899205176993No Hit
TGGATCTA6754494.063168604873247No Hit
NGGATCTA6436703.8720017882901048No Hit
CGGATCTA4678132.8141326651628296No Hit
GGGATCTA4626802.7832550645611347No Hit
AGGAGCTA415590.2499984810843265No Hit
AGGGTCTA319240.19203906518771No Hit
AGGATGTA247750.14903420122871555No Hit
AGGCTCTA192010.1155037617676112No Hit
AGGATCGA178370.1072986093770575No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)