FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17600323
Sequences flagged as poor quality0
Sequence length8
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1583260289.95631500626438No Hit
NGCAATTC6608083.754522005079111No Hit
TGCAATTC2840601.6139476531197752No Hit
CGCAATTC2669321.5166312572786307No Hit
GGCAATTC2067611.1747568496328165No Hit
AGCAGTTC439950.24996700344647083No Hit
AGCAATGC382410.21727442161146704No Hit
AGCACTTC358830.20387694021297226No Hit
AGCAATTA357530.20313831740474309No Hit
AGCAAGTC318010.1806841840345771No Hit
AGCATTTC226430.1286510480517886No Hit
AGCAATCC204710.11631036544045242No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)