FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486916

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486916
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16623701
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTACGCG11500.083.202729
TTTGCGC27250.078.980251
TGCGCGA24300.075.402821
GCGCTAG27700.069.297481
CGCCGAA25750.069.180251
GTGCGAC29650.069.154071
ACGACCG27650.068.3709261
TTACCCG34800.067.904321
GACGCGT27400.065.810381
ATAACGC30650.065.474461
GGCGACT32550.065.003281
GTACCGT35450.064.001418
CGAACGC32300.063.930651
TTCCGCG16050.063.6803557
GCGCGTA28800.063.1161961
GCCGGAT31700.063.0763781
CGGTACG24850.062.907921
CCGCTAT32950.062.2281651
GTTACGC25900.062.1319058
GTTCGCG33750.062.0705348
Produced by FastQC (version 0.11.5)