FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486918

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486918
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16499499
Sequences flagged as poor quality0
Sequence length8
%GC36

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1491858490.41840603766211No Hit
NATGCTTA6194393.754289751464575No Hit
TATGCTTA2630261.594145373747409No Hit
AATGCTTA1918851.1629747060804694No Hit
GATGCTTA1882001.1406406946053331No Hit
CATGCGTA375230.22741902648074344No Hit
CATGCTAA347990.21090943428039846No Hit
CAGGCTTA300890.18236311296482396No Hit
CATGGTTA268920.16298676705274506No Hit
CATGCTGA210030.12729477422314459No Hit
CGTGCTTA188960.11452468950723899No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)