FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486920

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486920
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21265586
Sequences flagged as poor quality0
Sequence length8
%GC61

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCAGA1779127983.66230302800027No Hit
TGTCCAGA14654926.89137839888353No Hit
NGTCCAGA8041073.781259543000602No Hit
AGTCCAGA5014282.3579317306374725No Hit
CGTCCAGA3413191.605029835528633No Hit
GGGCCAGA534110.25116166561316483No Hit
GGTCGAGA375410.17653404895590463No Hit
GGCCCAGA294430.13845374399746144No Hit
GGTCCAGC239940.11283018488180857No Hit
GGTCTAGA219220.10308674305989028No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)