FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486921

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486921
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17297048
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1320556776.34578455236986No Hit
AACATCCT11718726.7749826444373635No Hit
TACATCCT11229706.492263882253203No Hit
NACATCCT7272714.204596067490822No Hit
GACATCCT7142634.12939248361917No Hit
CACATCCA501390.28987027150528805No Hit
CACAGCCT369540.21364339163538193No Hit
CACATCCG251620.14546990908506469No Hit
CACATGCT248980.14394363708766952No Hit
CGCATCCT214790.12417725845473748No Hit
CACATCCC205490.11880061846391361No Hit
CCCATCCT198110.11453399447119532No Hit
CACATCGT176220.1018786558261271No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)