FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486926

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486926
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18085855
Sequences flagged as poor quality0
Sequence length8
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1544285185.38634750748582No Hit
NACTTGAC7836694.333049225485884No Hit
TACTTGAC6726473.719188282776789No Hit
CACTTGAC5217652.884934110109807No Hit
GACTTGAC4590712.5382875180631497No Hit
AGCTTGAC240900.13319801579742843No Hit
AACTTGGC213990.11831898464297098No Hit
AACTTGCC200550.11088776284007586No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)