FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486932

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486932
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18189567
Sequences flagged as poor quality0
Sequence length8
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1578100486.75854680872833No Hit
NACTTGAC7176643.945470499655104No Hit
TACTTGAC6167743.3908118868360084No Hit
CACTTGAC4477852.46176833126374No Hit
GACTTGAC4137092.274430171977156No Hit
AGCTTGAC278020.152845859387417No Hit
AACTTGCC212370.11675374130676118No Hit
AACTTGGC204370.11235561572191356No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)