FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486940

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486940
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18387752
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1565055485.11401502478388No Hit
NATAGCGA7189763.910081014797241No Hit
TATAGCGA6895743.7501810988096858No Hit
AATAGCGA6264973.4071429721262287No Hit
GATAGCGA4604632.504183219351664No Hit
CATAGCGC256540.13951678269317533No Hit
CATAGCGG230370.125284482844885No Hit
CAGAGCGA200300.10893120594621898No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)