FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17705479
Sequences flagged as poor quality0
Sequence length8
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1426558580.57158464902305No Hit
TACTTGAC10083755.695270938447923No Hit
CACTTGAC7452794.209312834744544No Hit
NACTTGAC7451314.208476935303473No Hit
GACTTGAC6563953.707298740689252No Hit
AACTTCAC492960.27842228950710685No Hit
AACTTAAC292770.16535559416381787No Hit
AACTTTAC281720.1591145882017651No Hit
AGCTTGAC226650.12801122183703698No Hit
AACTTGGC210580.11893493533837746No Hit
AACTTGCC183830.10382661773793299No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)