FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486942

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486942
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20215178
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT1616646479.97191021518584No Hit
GTGAGCCT12860416.361759466080389No Hit
ATGAGCCT9456864.678098802790656No Hit
NTGAGCCT7927233.9214247829032227No Hit
CTGAGCCT7660023.789241925052552No Hit
TTGAGCCG266890.1320245609511823No Hit
TGGAGCCT251720.1245202985598247No Hit
TTGGGCCT236800.11713970562119216No Hit
TTGAGCCC223280.11045166161782002No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)