FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18037597
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1383331776.69157371683157No Hit
AATAGCGA12220166.774827045975138No Hit
TATAGCGA11576116.417767289068493No Hit
NATAGCGA7617754.223262111909918No Hit
GATAGCGA7352064.07596422073295No Hit
CATAGCGC324240.17975786907757169No Hit
CATAGCGG274000.15190493500880412No Hit
CAGAGCGA242090.1342141084535817No Hit
CATAGCGT216560.12006033841425773No Hit
CATAGCAA211620.11732161440351505No Hit
CGTAGCGA202900.11248726756673852No Hit
CATGGCGA187950.10419902385001728No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)