FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486951

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486951
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20524068
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT1547484675.39853210386947No Hit
GTGAGCCT15310157.4596079100887795No Hit
ATGAGCCT13052986.3598405540266185No Hit
CTGAGCCT9990814.867850759410854No Hit
NTGAGCCT8640474.209920762297221No Hit
TTGAGGCT522910.2547789258932488No Hit
TTGAGACT375850.18312646401288477No Hit
TTGAGCCG272820.13292686420645264No Hit
TTGGGCCT233020.1135349970580881No Hit
TTGAGCCC229230.11168838458340716No Hit
TTGAGTCT223340.10881858313858636No Hit
TGGAGCCT221210.1077807771831588No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)