FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486952

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486952
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19901000
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT1701253385.48581980804984No Hit
GGTCGGAT9343854.695166072056681No Hit
NGTCGGAT7489223.763238028239787No Hit
AGTCGGAT4793262.4085523340535655No Hit
CGTCGGAT3412571.7147731269785436No Hit
TGGCGGAT562190.28249334204311344No Hit
TGTCGGGT483510.24295764031958192No Hit
TGTCGGCT384680.1932968192553138No Hit
TGCCGGAT349270.17550374353047585No Hit
TGTCGGAG268490.1349128184513341No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)